skimage#
- dbdicom.wrappers.skimage.area_closing_2d(input, **kwargs)[source]#
Return grayscale area closing of an image.
Wrapper for skimage.morphology.area_closing.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.area_closing_3d(input, **kwargs)[source]#
Return grayscale area closing of an image.
Wrapper for skimage.morphology.area_closing.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.area_opening_2d(input, **kwargs)[source]#
Return grayscale area opening of an image.
Wrapper for skimage.morphology.area_opening.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.area_opening_3d(input, **kwargs)[source]#
Return grayscale area opening of an image.
Wrapper for skimage.morphology.area_opening.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.canny(input, sigma=1.0, **kwargs)[source]#
wrapper for skimage.feature.canny # https://scikit-image.org/docs/dev/api/skimage.feature.html#skimage.feature.canny
- Parameters:
input (dbdicom series) –
- Returns:
filtered
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.closing_2d(input, **kwargs)[source]#
Return grayscale morphological closing of an image.
Wrapper for skimage.morphology.closing.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.closing_3d(input, **kwargs)[source]#
Return grayscale morphological closing of an image.
Wrapper for skimage.morphology.closing.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.convex_hull_image(series, **kwargs)[source]#
wrapper for skimage.morphology.convex_hull_image
- Parameters:
input (dbdicom series) –
- Returns:
filtered
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.convex_hull_image_3d(input, **kwargs)[source]#
wrapper for skimage.morphology.convex_hull_image
- Parameters:
input (dbdicom series) –
- Returns:
filtered
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.coregister_2d_to_2d(moving, fixed, return_array=False, attachment=1)[source]#
- dbdicom.wrappers.skimage.coregister_3d_to_3d(moving, fixed, return_array=False, attachment=1)[source]#
- dbdicom.wrappers.skimage.mdreg_constant_2d(series, attachment=1, max_improvement=1, max_iter=5)[source]#
- dbdicom.wrappers.skimage.mdreg_constant_3d(series, attachment=1, max_improvement=1, max_iter=5)[source]#
- dbdicom.wrappers.skimage.opening_2d(input, **kwargs)[source]#
Return grayscale morphological opening of an image.
Wrapper for skimage.morphology.opening.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.opening_3d(input, **kwargs)[source]#
Return grayscale morphological opening of an image.
Wrapper for skimage.morphology.opening.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.peak_local_max_3d(input, labels=None, **kwargs)[source]#
Determine local maxima
Wrapper for skimage.feature.peak_local_max function. # https://scikit-image.org/docs/stable/api/skimage.feature.html#skimage.feature.peak_local_max
- Parameters:
input (dbdicom series) –
- Returns:
filtered
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.remove_small_holes_2d(input, **kwargs)[source]#
Remove contiguous holes smaller than the specified size.
Wrapper for skimage.morphology.remove_small_holes.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.remove_small_holes_3d(input, **kwargs)[source]#
Remove contiguous holes smaller than the specified size.
Wrapper for skimage.morphology.remove_small_holes.
- Parameters:
input (dbdicom series) –
- Returns:
output
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.skeletonize(input, **kwargs)[source]#
Labels structures in an image
Wrapper for skimage.segmentation.watershed function.
- Parameters:
input (dbdicom series) –
markers (dbdicom series of the same dimensions as series) –
- Returns:
filtered
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.skeletonize_3d(input, **kwargs)[source]#
Labels structures in an image
Wrapper for skimage.segmentation.watershed function.
- Parameters:
input (dbdicom series) –
markers (dbdicom series of the same dimensions as series) –
- Returns:
filtered
- Return type:
dbdicom series
- dbdicom.wrappers.skimage.watershed_2d(input, markers=None, mask=None, **kwargs)[source]#
Labels structures in an image
Wrapper for skimage.segmentation.watershed function.
- Parameters:
input (dbdicom series) –
markers (dbdicom series of the same dimensions as series) –
- Returns:
filtered
- Return type:
dbdicom series